THE SL FORMAT IS NEW. TET HAD NO TIME TO ASSIMILATE IT COMPLETELY, PLEASE ACCEPT ITS APOLOGIES. The 'tet' module is designed to edit, convert or compute data. Most output files of CLIC, as rectangular matrices, are prepared to be (and can easily be) converted into the 'nts' format of the Rohlf's TPS series. This conversion can be performed manually, or performed by TET. ------------------------------------------------- INPUT FILE ------------------------------------------------- Almost any of the output files of the CLIC modules: 'tet' tries to recognize the internal format, and asks you to confirm its diagnostic. ------------------------------------------------- OUTPUT FILES ------------------------------------------------- as many as possible transformations; output files names are shortly indicated after the '>>' symbol in the 'tet' menu of transformations ..._format.txt, and ..._DB.txt <- also with COO (with 'coord_[date].txt' as input file) ..._OTL.txt, and ...OTL_DB.txt <- also with COO (with 'coord_[date].txt' as input file) ..._DB_scaled.txt and ..._scaled.txt <- only with TET (with '..._DB.txt' as input file) ..._OTL_DB_scaled.txt and ..._OTL_scaled.txt <- only with TET (with '..._OTL_DB.txt' as input file) ..._SLformat <- combined LM and semiLM (from CLIC_91) ..._NewLig.txt <- file with removed row(s) ..._NewCol.txt <- file with removed col(s) ..._InsLig.txt <- file with inserted row(s) ..._InsCol.txt <- file with inserted col(s) ..._TAB.txt <- file with spaces replaced by tabs ..._concatlog.txt <- file report about concatenation ..._LN <- file with (natural) log-data ..._TRAN <- file with transposed data ..._DIST <- file with distances between landmarks ------------------------------------------------- Files format ------------------------------------------------- The CLIC data file internal format is as follows: - The first row is a free comment, next rows are the data. - The first row is mandatory. - Data (next rows) are organized as a table without headers - Empty rows are allowed, except the first one (see above). - Columns are separated by a tabulation. Exceptions to this CLIC data format are 1. The coord_[date].txt file, i.e., the output file of the 'coo' module. 2. The CLIC data base format ('..._OTL_DB.txt'): there are headers! 3. The CLIC distance matrix format ('..._MAHAphylip.txt', etc.): except for the first row (the comment), its format depends on the external software to which it is destinated.